.. SpaCon_results_reproduction documentation master file, created by
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SpaCon_results_reproduction documentation
=========================================

This tutorial contains detailed reproduction code for the main results in the article
**"SpaCon: Integrative Analysis of Spatial Transcriptome and Connectome"**.

The processed data can be downloaded from https://drive.google.com/drive/folders/1lQQQVjXt8lvciuKq_Jkp4LGsR_EQXFAi?usp=sharing


.. toctree::
   :maxdepth: 2
   :caption: Contents:

   1_ctx_th_connection_and_gene_exp_cluster
   2_ctx_th_connection_and_th_gene_pc1
   3_ctx_th_connection_and_gene_correlation
   4_ctx_layer56_and_th_correlation
   5_ctx_th_gene_analysis
   6_ctx_cc_intracellular_extracellular_compare
   7_cc_mRNA_and_cell_plot
   8_coronal_sagittal_cc_in_out_deg_compare
   9_ctx_3region_DEGs_expression_in_cc
   10_ctx_cc_connection_and_correlation
   11_PLS_find_metagene